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add initial configs for perf testing on ESM2 in JET (bionemo2) #497

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merged 50 commits into from
Jan 7, 2025

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@dorotat-nv dorotat-nv commented Dec 4, 2024

Adding ESM2 650M conv + perf partial configs for benchmarking with required changes

@dorotat-nv dorotat-nv changed the title add partial configs for perf testing on ESM2 in JET (bionemo2) add initial configs for perf testing on ESM2 in JET (bionemo2) Dec 4, 2024
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Looks good, please mirror the changes for ESM2 train in both Geneformer and the generic train entrypoint used by pydantic: bionemo-llm/src/bionemo/llm/train.py

@skothenhill-nv , added required changes, at least the ones I am aware of

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thanks for updating the pydantic paths! Love the new model valdiator.

@dorotat-nv dorotat-nv enabled auto-merge (squash) December 12, 2024 16:30
@dorotat-nv dorotat-nv self-assigned this Dec 12, 2024
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@dorotat-nv dorotat-nv force-pushed the dorotat/esm2-perf-jet-bionemo2 branch from 6876628 to d36a16d Compare January 6, 2025 14:50
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Signed-off-by: dorotat-nv <[email protected]>
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@dorotat-nv dorotat-nv merged commit 5eddee1 into main Jan 7, 2025
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@dorotat-nv dorotat-nv deleted the dorotat/esm2-perf-jet-bionemo2 branch January 7, 2025 15:55
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4 participants